PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0012s0890.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 181aa    MW: 19592.7 Da    PI: 9.1827
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0012s0890.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.71.7e-1959109255
                     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                             +y+GVr+++ +g+++AeIrd +    r +r++lg+f taeeAa a+++a+ +++g
  SapurV1A.0012s0890.1.p  59 HYRGVRRRP-WGKYAAEIRDSRR---RgARIWLGTFETAEEAALAYDRAAFNMRG 109
                             8********.**********433...34*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.02E-3158118No hitNo description
Gene3DG3DSA:3.30.730.101.2E-3158118IPR001471AP2/ERF domain
PROSITE profilePS5103223.60459117IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-2359119IPR016177DNA-binding domain
PfamPF008475.0E-1559109IPR001471AP2/ERF domain
SMARTSM003803.7E-3659123IPR001471AP2/ERF domain
PRINTSPR003671.9E-116071IPR001471AP2/ERF domain
PRINTSPR003671.9E-118399IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MVLTSQSHDL PLNENDSQDM VIYQMINDIS APNSSTCSTL PRSHVSTSSM LRPAIAKKHY  60
RGVRRRPWGK YAAEIRDSRR RGARIWLGTF ETAEEAALAY DRAAFNMRGS KALLNFPAEV  120
VAAPPSAPNF QPVSSSTRSS ENASESSCGS RTISIPTSQS ESESSQSGGP RQKGSDIVEN  180
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A2e-3258120466ATERF1
2gcc_A2e-3258120466ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002305766.21e-103hypothetical protein POPTR_0004s05100g
SwissprotO046813e-52PTI5_SOLLC; Pathogenesis-related genes transcriptional activator PTI5
TrEMBLB9H2N11e-103B9H2N1_POPTR; Uncharacterized protein
STRINGPOPTR_0004s05100.11e-103(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93393042
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.18e-30ethylene responsive element binding factor 1